Faculty of Biology and Biotechnology

Publications

• Book

  Alshanskaia E., Martynova O.

  2023 Fifth International Conference Neurotechnologies and Neurointerfaces (CNN) 18-20 Sept. 2023

   Cognitive and emotional load in the course of increasing the complexity of tasks leads to the activation of various parts of the autonomic nervous system (ANS) and can be accompanied by an increase in the efficiency of problem solving. An increase in cognitive load under the condition of high motivation is a stress factor and is expressed in a different reaction of the sympathetic and parasympathetic links in response to the load. This study explored the ANS reactions by measuring the pupil size of 61 healthy sub-clinical volunteers in response to the gradually increasing complexity of tasks. The experiment included 3 blocks of a combined visual search and 1-back task with six levels of difficulty. K-mean clustering method was used for the analysis. An increase in the complexity of the task from the first to the sixth level led to different dynamics of the pupil size in the three clustered groups. In one group, an intense high switchability and an active reaction with a large amplitude of changes were visible, in the second group the dynamics of changes was minimal, and a third intermediate group was also identified. Our results highlight individual differences in the reaction of the sympathetic and parasympathetic branches of ANS under cognitive workload depending on biometric and psychometric parameters. 

  IEEE, 2023.

• Article

  Maltseva D., Kirillov I., Zhiyanov A. et al.

  Incautious design of shRNAs for stable overexpression of miRNAs could result in generation of undesired isomiRs

  shRNA-mediated strategy of miRNA overexpression based on RNA Polymerase (Pol III) expression cassettes is widely used for miRNA functional studies. For some miRNAs, e.g., encoded in the genome as a part of a polycistronic miRNA cluster, it is most likely the only way for their individual stable overexpression. Here we have revealed that expression of miRNAs longer than 19 nt (e.g. 23 nt in length hsa-miR-93-5p) using such approach could be accompanied by undesired predominant generation of 5′ end miRNA isoforms (5′-isomiRs). Extra U residues (up to five) added by Pol III at the 3′ end of the transcribed shRNA during transcription termination could cause a shift in the Dicer cleavage position of the shRNA. This results in the formation of 5′-isomiRs, which have a significantly altered seed region compared to the initially encoded canonical hsa-miR-93-5p. We demonstrated that the commonly used qPCR method is insensitive to the formation of 5′-isomiRs and cannot be used to confirm miRNA overexpression. However, the predominant expression of 5′-isomiRs without three or four first nucleotides instead of the canonical isoform could be disclosed based on miRNA-Seq analysis. Moreover, mRNA sequencing data showed that the 5′-isomiRs of hsa-miR-93-5p presumably regulate their own mRNA targets. Thus, omitting miRNA-Seq analysis may lead to erroneous conclusions regarding revealed mRNA targets and possible molecular mechanisms in which studied miRNA is involved. Overall, the presented results show that structures of shRNAs for stable overexpression of miRNAs requires careful design to avoid generation of undesired 5′-isomiRs.

  Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 2024. Vol. 1867. No. 3.

• Book chapter

  Панков Н. С., Pozanenko A. S., Belkin S. et al.

  AWARE: Alert Watcher and Astronomical Rapid Explorer

  We present the software aware for automatic scheduling the observations with the ground based network of optical telescopes GRB-IKI-FuN (extendable on other facilities). It was designed to provide the optimal coverage of large uncertainty contours of LIGO/Virgo/KAGRA (LVK) gravitational wave events, and gamma-ray bursts (GRBs), detected by space missions, which is crucial for fast look-up for their optical counterparts. In addition, aware provides capabilities for notifying users on new alert messages received from General Coordinate Network (GCN), and sharing final products generated by the planner via Telegram bot. The implementation of the software allows both scheduler, and Telegram bot to run concurrently in near real-time. In this paper, we discuss main follow-up tactics of LVK events, and GRBs. We overview the automatic planning software aware in terms of an architecture and algorithms. The example products made by aware since the beginning of the LVK O4 run on 25 May 2023 are given. The plans for future work are briefly discussed.

  In bk.: Data Analytics and Management in Data Intensive Domains: 25th International Conference, DAMDID/RCDL 2023, Moscow, Russia, October 24–27, 2023, Revised Selected Papers. Vol. 2086: Communications in Computer and Information Science. Springer, 2024. P. 225-245.

• Working paper

  Liutsko L., Malova Y., Vinokurova E. et al.

  Stress Resilience (Proprioceptive and Verbal Individual Differences) in Onco-Patients, Sportsmen and Controls

  The characteristics of response to stressful situations depend on a complex of factors such as personality traits, emotional regulation, health state, features of the nervous system, motor functions and proprioception. In cases of disruption of the brain's dopamine system due to disease or chemotherapy, hormone discharge due to stress, changes in emotions and proprioception may occur. The aim of our study was to find the relationship of stress resilence in verbal test and individual differences performed in proprioceptive test in onco-patients, sportsmen and group of control; as well as to observe the differences between these groups in the verbal stress resistance and individual differences proprioceptive tests. The results showed that onco-patients were less resistant as per verbal stress resistance outcomes for a major part of variables compared to other groups. The sportsmen were superior in verbal Risk and Control dimensions compared to other groups; but less in Positive Affectiveness. The proprioceptive test perfomance revealed the only statistically significant difference in performance in the dimension related to Mood, showing more Pessimism in the sportsmen group, but more Optimism in the oncopatients at temperamental (or intrisinc) level. The obtained results can be used by psychologists, therapists, coach and healthcare when needed to attend the specific needs of public, being pateints or sportsmen, etc.

  public health and health services. 20944. MDPI, 2023